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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- KAT2A coupled with the α-KGDH complex acts as a histone H3 succi... 2017 · 547 cites
Deep data QC
99/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
35759905016
reported
total reads
235262533
reported
n content pct
0.001
measured
pct q20 bases
93.3
measured
pct q30 bases
90.8
measured
gc content pct
49.4
measured
mean read length
76
measured
mean base quality
33.7
measured
adapter content pct
0.62
measured
duplication rate pct
17.51
measured
supplementary file types
CSV
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.8
measured
×1
100%
mean base quality
33.7
measured
×0.6
95%
adapter content pct
0.62
measured
×0.4
100%
duplication rate pct
17.51
measured
×0.4
100%
QC cost
18 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0