GSE98052

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Mapping the human DC lineage through the integration of high-dim... 2017 · 567 cites

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

High-quality bulk-RNA-seq human dataset with excellent measured metrics. Minimal duplication (3.33%) and strong Q30 bases (93%) drive the A-grade; only minor adapter content (4.06%) prevents perfect score. Suitable for reuse with standard preprocessing.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.008 measured

pct q20 bases 95.1 measured

pct q30 bases 93 measured

gc content pct 44.5 measured

mean read length 60 measured

mean base quality 36.7 measured

adapter content pct 4.06 measured

duplication rate pct 3.33 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93 measured ×1 100%

mean base quality 36.7 measured ×0.6 100%

adapter content pct 4.06 measured ×0.4 89%

duplication rate pct 3.33 measured ×0.4 100%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0