Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE98257

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mus musculus bulk RNA-seq from NextSeq 500 instrument with 614 million short reads (52 billion bases) at good quality (95.8% Q20, 93.5% Q30). The Illumina HiSeq 2500-class output and consistent base composition enable expression profiling of mammalian gene regulatory networks. This dataset offers sufficient depth for transcript quantification and isoform detection across diverse mouse tissues or developmental stages.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
60 / 15 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 52222954075 reported
total reads 614387695 reported
n content pct 0.002 measured
pct q20 bases 95.8 measured
pct q30 bases 93.5 measured
gc content pct 49.4 measured
mean read length 85 measured
mean base quality 34.3 measured
adapter content pct 0.07 measured
duplication rate pct 19.5 measured
supplementary file types CSV reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.5 measured ×1 100%
mean base quality 34.3 measured ×0.6 100%
adapter content pct 0.07 measured ×0.4 100%
duplication rate pct 19.5 measured ×0.4 100%
QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0