Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE98816

GEO first seen 2020

Single cell RNA-seq of mouse brain vascular transcriptomes

Organism
Mus musculus
Samples
3,186
Type
Expression profiling by high...
Submitted
2017-05-11

By analyzing thousands of vascular single cell transcriptomes from adult mouse brain, we provide molecular definitions of the principal vascular (endothelial and mural cells), and vascular-associated cell classes.

Provenance — who produced it, who reused it

Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Michael VanlandewijckLiqun HeMaarja MäeJohanna AndraeChrister Betsholtz
Reused by

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3,186 / 3,186 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 100633590537 reported
total reads 2340316059 reported
supplementary file types TXT reported
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently