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Single cell RNA-seq of mouse brain vascular transcriptomes
By analyzing thousands of vascular single cell transcriptomes from adult mouse brain, we provide molecular definitions of the principal vascular (endothelial and mural cells), and vascular-associated cell classes.
Provenance — who produced it, who reused it
Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Michael VanlandewijckLiqun HeMaarja MäeJohanna AndraeChrister Betsholtz
Reused by
- Endothelial heterogeneity across distinct vascular beds during h... 2020 · 295 cites
- Role of Calcium Signaling Pathway‐Related Gene Regulatory Networ... 2021 · 106 cites
4 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3,186 / 3,186 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
100633590537
reported
total reads
2340316059
reported
supplementary file types
TXT
reported
QC cost
9 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently