Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

GSM1008997

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Gossypium hirsutum (cotton) bulk RNA-seq with 49 bp short reads at 98.6% Q20 and 93.8% Q30 quality, though experimental protocol details are unavailable. The low adapter content (0%) and measured 45.7% GC content indicate clean sequencing run suitable for examining cultivated cotton gene expression. Users should note the missing instrument information and consider whether this dataset's quality is sufficient for variant calling or requires dedicated genomic DNA sequencing for more comprehensive agricultural genomics.

Data type / assay
bulk-RNA-seq
Organism
Gossypium hirsutum
Metrics (value · how obtained)
n content pct 0.004 measured
pct q20 bases 98.6 measured
pct q30 bases 93.8 measured
gc content pct 45.7 measured
mean read length 49 measured
mean base quality 35.8 measured
adapter content pct 0 measured
duplication rate pct 72.1 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%
mean base quality 35.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 72.1 measured ×0.4 6%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0