Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSM1078108

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

37/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Sinorhizobium meliloti bulk RNA-seq (nitrogen-fixing rhizobium) with 86.2% Q20 and 79.2% Q30 quality on 50 bp reads, hampered by elevated adapter content (5.96%) and lower mean base quality (29.2). The 60% GC content reflects this bacterium's high-GC genome. While usable for abundance estimation, prioritize rigorous adapter trimming and consider this dataset for exploratory work rather than high-stringency variant calling in bacterial symbiosis studies.

Data type / assay
bulk-RNA-seq
Organism
Sinorhizobium meliloti
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 86.2 measured
pct q30 bases 79.2 measured
gc content pct 60 measured
mean read length 50 measured
mean base quality 29.2 measured
adapter content pct 5.96 measured
duplication rate pct 75.78 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 37/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.2 measured ×1 46%
mean base quality 29.2 measured ×0.6 20%
adapter content pct 5.96 measured ×0.4 78%
duplication rate pct 75.78 measured ×0.4 0%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0