GSM1078118

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

37/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Sinorhizobium meliloti bulk RNA-seq with identical quality profile to GSM1078108 (86.2% Q20, 79.2% Q30, 5.96% adapters), including 60% GC consistent with this symbiotic bacterium's genomic composition. This replicate or technical repeat offers confirmation of expression patterns in rhizobial-legume interactions. Evaluate both samples together to distinguish biological signal from sequencing artifacts, given the borderline quality metrics.

Data type / assay

bulk-RNA-seq

Organism

Sinorhizobium meliloti

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 86.2 measured

pct q30 bases 79.2 measured

gc content pct 60 measured

mean read length 50 measured

mean base quality 29.2 measured

adapter content pct 5.96 measured

duplication rate pct 75.78 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 37/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.2 measured ×1 46%

mean base quality 29.2 measured ×0.6 20%

adapter content pct 5.96 measured ×0.4 78%

duplication rate pct 75.78 measured ×0.4 0%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0