GSM1184316

GEO first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus bulk RNA-seq delivering 98.6% Q20 and 97% Q30 with 50 bp reads and minimal adapter contamination (0.06%). The near-perfect base composition (50.9% GC) and high mean quality (38.2) indicate well-executed sequencing. This dataset is well-suited for sensitive detection of lowly expressed genes and splice junction mapping in mouse development or disease models.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.005 measured

pct q20 bases 98.6 measured

pct q30 bases 97 measured

gc content pct 50.9 measured

mean read length 50 measured

mean base quality 38.2 measured

adapter content pct 0.06 measured

duplication rate pct 36.57 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97 measured ×1 100%

mean base quality 38.2 measured ×0.6 100%

adapter content pct 0.06 measured ×0.4 100%

duplication rate pct 36.57 measured ×0.4 85%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0