GSM1215618

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Danio rerio (zebrafish) bulk RNA-seq with 100 bp reads at 98.8% Q20 and 93.9% Q30, minimal adapter content (0.03%), and balanced 46.3% GC. The combination of length and quality enables comprehensive splicing analysis and accurate transcript isoform assignment in this model organism for developmental and chemical genomics studies.

Data type / assay

bulk-RNA-seq

Organism

Danio rerio

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 98.8 measured

pct q30 bases 93.9 measured

gc content pct 46.3 measured

mean read length 100 measured

mean base quality 36.2 measured

adapter content pct 0.03 measured

duplication rate pct 42.37 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

mean base quality 36.2 measured ×0.6 100%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 42.37 measured ×0.4 73%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0