GSM1226159

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens RNA-Seq with concerning metrics: 43.3% adapter contamination, lower Q-scores (94.7% Q20, 87.6% Q30), and 101 bp read length. High adapter content suggests library prep issues; filtering strongly recommended.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.038 measured

pct q20 bases 94.7 measured

pct q30 bases 87.6 measured

gc content pct 50.8 measured

mean read length 101 measured

mean base quality 34.4 measured

adapter content pct 43.3 measured

duplication rate pct 35.85 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.6 measured ×1 88%

mean base quality 34.4 measured ×0.6 100%

adapter content pct 43.3 measured ×0.4 0%

duplication rate pct 35.85 measured ×0.4 87%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0