GSM1340576

GEO sample first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens RNA-Seq with 36 bp reads, 98.9% Q20, 96.2% Q30, and low adapter (0.29%); high-quality metrics despite metadata limitations. GEO verification recommended.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.008 measured

pct q20 bases 98.9 measured

pct q30 bases 96.2 measured

gc content pct 52.5 measured

mean read length 36 measured

mean base quality 38 measured

adapter content pct 0.29 measured

duplication rate pct 19.74 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0.29 measured ×0.4 100%

duplication rate pct 19.74 measured ×0.4 100%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0