GSM1584499

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens; Bos taurus; Macacia fascicularis ncRNA-Seq on MiSeq with 1.11 billion short reads and 56.8 Gb at high quality (98.4% Q20, 94.8% Q30). Multi-species small RNA profiling enables comparative ncRNA studies across primates and livestock.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens; Bos taurus; Macaca fascicularis

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

41 / 41 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 56843954391 reported

total reads 1114587341 reported

n content pct 0 measured

pct q20 bases 98.4 measured

pct q30 bases 94.8 measured

gc content pct 50.3 measured

mean read length 51 measured

mean base quality 36.6 measured

adapter content pct 83.97 measured

duplication rate pct 16.73 measured

supplementary file types FASTA reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.8 measured ×1 100%

mean base quality 36.6 measured ×0.6 100%

adapter content pct 83.97 measured ×0.4 0%

duplication rate pct 16.73 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0