GSM1584517

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bos taurus RNA-Seq with 51 bp reads, 98.4% Q20, 94.8% Q30, and 83.97% adapter contamination. Same contamination pattern in related Bos taurus samples; systematic issue.

Data type / assay

bulk-RNA-seq

Organism

Bos taurus

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 98.4 measured

pct q30 bases 94.8 measured

gc content pct 50.3 measured

mean read length 51 measured

mean base quality 36.6 measured

adapter content pct 83.97 measured

duplication rate pct 16.73 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.8 measured ×1 100%

mean base quality 36.6 measured ×0.6 100%

adapter content pct 83.97 measured ×0.4 0%

duplication rate pct 16.73 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0