Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSM1706496

GEO sample

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq (mouse). Grade A quality (98/100) matching GSM1706489 with identical metrics across all measured parameters. Q30 boundary at 89.2% is the only measured constraint; otherwise clean for expression work. Reusable for expression profiling.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.008 measured
pct q20 bases 94.8 measured
pct q30 bases 89.2 measured
gc content pct 52.3 measured
mean read length 75 measured
mean base quality 34.4 measured
adapter content pct 0.74 measured
duplication rate pct 25.63 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.2 measured ×1 96%
mean base quality 34.4 measured ×0.6 100%
adapter content pct 0.74 measured ×0.4 100%
duplication rate pct 25.63 measured ×0.4 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 50