GSM1820483

GEO sample first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens RNA-Seq with 101 bp reads, 93.8% Q20, 89.2% Q30, and 0.82% adapter. Moderate human transcriptomics quality.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.009 measured

pct q20 bases 93.8 measured

pct q30 bases 89.2 measured

gc content pct 49.7 measured

mean read length 101 measured

mean base quality 34.9 measured

adapter content pct 0.82 measured

duplication rate pct 20.63 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.2 measured ×1 96%

mean base quality 34.9 measured ×0.6 100%

adapter content pct 0.82 measured ×0.4 100%

duplication rate pct 20.63 measured ×0.4 100%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0