GSM2186728
GEO sampleProvenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Saccharomyces cerevisiae bulk-RNA-seq with 50 bp reads achieved exceptional basecall quality (99.1% Q20, 97.3% Q30), but displays critically high 96.68% adapter contamination indicating likely library contamination with adapter-only fragments. Rigorous demultiplexing and adapter removal is essential; users should verify insert-size distributions before proceeding with expression analysis in this yeast model.
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0
Scientific quality
Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.