GSM2230762

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

5 further papers cite this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens; Mus musculus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

19 / 6 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 674208964768 reported

total reads 6442249678 reported

n content pct 0.01 measured

pct q20 bases 99.1 measured

pct q30 bases 97.8 measured

gc content pct 42 measured

mean read length 55 measured

mean base quality 36.2 measured

adapter content pct 10.23 measured

duplication rate pct 40.18 measured

supplementary file types CSV reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.8 measured ×1 100%

mean base quality 36.2 measured ×0.6 100%

adapter content pct 10.23 measured ×0.4 54%

duplication rate pct 40.18 measured ×0.4 77%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0