GSM2409726

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Saccharomyces cerevisiae RNA-Seq on HiSeq 2500 with 552 million short reads and 69.6 Gb at high quality (97.3% Q20, 95.1% Q30). Comprehensive yeast transcriptomics for functional genomics and condition-specific expression studies.

Data type / assay

bulk-RNA-seq

Organism

Saccharomyces cerevisiae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

12 / 12 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 69577199874 reported

total reads 552199999 reported

n content pct 0.002 measured

pct q20 bases 97.3 measured

pct q30 bases 95.1 measured

gc content pct 46.5 measured

mean read length 126 measured

mean base quality 35.7 measured

adapter content pct 12.29 measured

duplication rate pct 85.05 measured

supplementary file types TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%

mean base quality 35.7 measured ×0.6 100%

adapter content pct 12.29 measured ×0.4 43%

duplication rate pct 85.05 measured ×0.4 0%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0