GSM2695562

GEO first seen 2019

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ATAC-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.004 measured

pct q20 bases 95.7 measured

pct q30 bases 94.3 measured

gc content pct 46.1 measured

mean read length 74.5 measured

mean base quality 34.4 measured

adapter content pct 8.57 measured

duplication rate pct 20.84 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.3 measured ×1 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0