GSM2906413

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens; Mus musculus mixed-species RNA-Seq on HiSeq 2500 with 14.8 billion short reads and 3.17 Tb at moderate quality (95.1% Q20, 89.1% Q30). Enables comparative transcriptomics and cross-species analysis of human and mouse orthologous genes.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens; Mus musculus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

178 / 90 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 3166657704485 reported

total reads 14813828729 reported

n content pct 0.006 measured

pct q20 bases 95.1 measured

pct q30 bases 89.1 measured

gc content pct 40.7 measured

mean read length 117.6 measured

mean base quality 37.4 measured

adapter content pct 0 measured

duplication rate pct 78.08 measured

supplementary file types TAR, TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.1 measured ×1 96%

mean base quality 37.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 78.08 measured ×0.4 0%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0