GSM3017263

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus RNA-Seq with 66 bp reads, 93.7% Q20, 91.5% Q30, minimal N (0.001%), and concerning 5.25% adapter. Quality adequate but adapter contamination warrants investigation.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 93.7 measured

pct q30 bases 91.5 measured

gc content pct 43.9 measured

mean read length 66 measured

mean base quality 33.8 measured

adapter content pct 5.25 measured

duplication rate pct 8.34 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.5 measured ×1 100%

mean base quality 33.8 measured ×0.6 97%

adapter content pct 5.25 measured ×0.4 82%

duplication rate pct 8.34 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0