GSM3027035

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus RNA-Seq with notably long 151 bp reads, 90.4% Q20, 77.6% Q30, and 0.25% adapter. Lower quality at longer read length; filtering recommended.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 90.4 measured

pct q30 bases 77.6 measured

gc content pct 44.1 measured

mean read length 151 measured

mean base quality 34.2 measured

adapter content pct 0.25 measured

duplication rate pct 38.93 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 77.6 measured ×1 38%

mean base quality 34.2 measured ×0.6 100%

adapter content pct 0.25 measured ×0.4 100%

duplication rate pct 38.93 measured ×0.4 80%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0