GSM3150456

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This rat bulk-RNA-seq dataset features 75bp short reads at 92.2% Q20 and 89.6% Q30 quality with moderate GC (49.6%), platform unspecified. The metrics are compatible with standard Illumina short-read RNA-sequencing for rat gene expression studies, though instrument documentation should be obtained for complete methodological detail.

Data type / assay

bulk-RNA-seq

Organism

Rattus norvegicus

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 92.2 measured

pct q30 bases 89.6 measured

gc content pct 49.6 measured

mean read length 75 measured

mean base quality 33.3 measured

adapter content pct 0.15 measured

duplication rate pct 36.97 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.6 measured ×1 98%

mean base quality 33.3 measured ×0.6 88%

adapter content pct 0.15 measured ×0.4 100%

duplication rate pct 36.97 measured ×0.4 85%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0