GSM3453538

GEO sample first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Mus musculus bulk-RNA-seq dataset contains 98bp short reads with excellent quality (90.6% Q20, 85.2% Q30) and moderate GC content (47.8%), platform unspecified. The longer read length compared to typical 75-76bp libraries may provide improved isoform distinction and repetitive-region mapping in mouse transcriptome studies.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.55 measured

pct q20 bases 90.6 measured

pct q30 bases 85.2 measured

gc content pct 47.8 measured

mean read length 98 measured

mean base quality 35.3 measured

adapter content pct 0.03 measured

duplication rate pct 34.14 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.2 measured ×1 76%

mean base quality 35.3 measured ×0.6 100%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 34.14 measured ×0.4 91%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0