GSM3554371

GEO first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Mus musculus bulk-RNA-seq comprises 50bp short reads with excellent quality (99.1% Q20, 97.3% Q30) and 50.1% GC content, platform unspecified. The high quality metrics and mid-range read length support reliable gene expression quantification in mouse tissues for developmental, comparative, or condition-response studies.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.042 measured

pct q20 bases 99.1 measured

pct q30 bases 97.3 measured

gc content pct 50.1 measured

mean read length 50 measured

mean base quality 39.5 measured

adapter content pct 0.01 measured

duplication rate pct 34.5 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%

mean base quality 39.5 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 34.5 measured ×0.4 90%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0