GSM3791728

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This human bulk-RNA-seq contains 28.9bp short reads with exceptional quality (99.4% Q20, 97.9% Q30) and elevated GC content (58.2%), platform unspecified. The short length and high GC bias suggest this may represent biased or targeted sequencing; researchers should clarify library preparation details before using for unbiased transcriptome representation.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.031 measured

pct q20 bases 99.4 measured

pct q30 bases 97.9 measured

gc content pct 58.2 measured

mean read length 28.9 measured

mean base quality 39.2 measured

adapter content pct 0 measured

duplication rate pct 75.3 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%

mean base quality 39.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 75.3 measured ×0.4 0%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0