GSM4096261

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Mus musculus bulk-RNA-seq dataset presents 26bp short reads with high quality (97.4% Q20, 91.3% Q30), platform unspecified. The short read length limits complex transcript isoform resolution but may be suitable for simple gene counting and quantification in mouse expression studies.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 97.4 measured

pct q30 bases 91.3 measured

gc content pct 45.7 measured

mean read length 26 measured

mean base quality 38.1 measured

adapter content pct 0 measured

duplication rate pct 4.93 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.3 measured ×1 100%

mean base quality 38.1 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 4.93 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0