GSM4150376

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This human bulk-RNA-seq features extremely short 18bp reads at very high quality (97.2% Q20, 95.6% Q30), platform unspecified. The ultra-short read length is atypical and severely restricts mapping to the human genome; researchers should clarify whether this represents targeted small-RNA sequencing, sequencing adaptors, or represents only a portion of the full read length.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 97.2 measured

pct q30 bases 95.6 measured

gc content pct 46.7 measured

mean read length 18 measured

mean base quality 33.9 measured

adapter content pct 0 measured

duplication rate pct 72.02 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

mean base quality 33.9 measured ×0.6 98%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 72.02 measured ×0.4 7%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0