GSM4150378

GEO first seen 2023

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens; Mus musculus

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

576 / 4 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 2692340117724 reported

total reads 20158667596 reported

n content pct 0.001 measured

pct q20 bases 97.2 measured

pct q30 bases 95.6 measured

gc content pct 46.7 measured

mean read length 18 measured

mean base quality 33.9 measured

adapter content pct 0 measured

duplication rate pct 72.02 measured

supplementary file types MATRIX, RDS, TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

mean base quality 33.9 measured ×0.6 98%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 72.02 measured ×0.4 7%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0