GSM4403933

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Zea mays (maize) bulk-RNA-seq features 140.4bp short reads with exceptionally high quality (98% Q20, 94.5% Q30) and 55.1% GC content, platform undocumented. The extended read length supports improved transcript assembly and quantification for plant gene expression studies, though researchers should verify the library preparation protocol to confirm read-length claims.

Data type / assay

bulk-RNA-seq

Organism

Zea mays

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 98 measured

pct q30 bases 94.5 measured

gc content pct 55.1 measured

mean read length 140.4 measured

mean base quality 36.1 measured

adapter content pct 0 measured

duplication rate pct 31.94 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%

mean base quality 36.1 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 31.94 measured ×0.4 96%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0