Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSM4447249

GEO sample

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is human bulk RNA-seq (expression profiling by high-throughput sequencing), and on the metrics actually measured it earns a clean A: base quality is excellent, with 98.9% of bases at Q30 and a mean base quality of 35, meaning the reads are highly accurate and well-suited to confident alignment and expression quantification. The grade is further reinforced by effectively zero adapter contamination and a low 1.54% duplication rate, indicating clean library prep and good library complexity rather than PCR-driven redundancy that would distort counts. The main caveat for reuse is the very short 28 bp mean read length, which is fine for gene-level expression but limits isoform resolution, splice-junction detection, and multi-mapping disambiguation. Note also that the score was driven almost entirely by per-base quality metrics; depth, mapping rate, and rRNA/intronic fractions were not part of this pass, so confirm sequencing depth and alignment statistics independently before relying on it for differential-expression or low-abundance transcript work.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Files available
H5
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 99.2 measured
pct q30 bases 98.9 measured
gc content pct 48 measured
mean read length 28 measured
mean base quality 35 measured
adapter content pct 0 measured
duplication rate pct 1.54 measured
supplementary file types H5 reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.9 measured ×1 100%
mean base quality 35 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 1.54 measured ×0.4 100%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 87