Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSM4455937

GEO sample

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is bulk RNA-seq from human tissue, and on the measured QC metrics it is a genuinely strong dataset: 93.9% of bases at Q30 and a mean base quality of 36 indicate highly accurate base calls, while a 0.45% adapter content and a 9.91% duplication rate point to clean, well-prepared libraries with minimal redundancy or trimming artifacts — together these are the metrics that drove the perfect score and make the reads trustworthy for quantification and downstream variant or expression analysis. The 150 bp read length, 53.3% GC, and near-zero N content are all consistent with a healthy human transcriptomic library. The one caveat is coverage: there is no reported read or alignment depth here (and the metadata fetch failed with an HTTP 429), so you cannot yet judge sequencing depth or library complexity, which directly limit sensitivity for low-expression transcripts and rare variants. Because evidence_strength is reported as the maximal 1, the per-read quality reading is solid and not provisional, but I would confirm depth and mapping rate before relying on this for quantitative reuse.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 97.8 measured
pct q30 bases 93.9 measured
gc content pct 53.3 measured
mean read length 150 measured
mean base quality 36 measured
adapter content pct 0.45 measured
duplication rate pct 9.91 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%
mean base quality 36 measured ×0.6 100%
adapter content pct 0.45 measured ×0.4 100%
duplication rate pct 9.91 measured ×0.4 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 70