GSM4626007

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Arabidopsis thaliana bulk-RNA-seq features 91bp short reads with high quality (97.6% Q20, 93.8% Q30) and 44.4% GC content, platform unspecified. The longer read length enhances transcript assembly and isoform discrimination compared to standard 75bp libraries for plant transcriptome analysis.

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Metrics (value · how obtained)

n content pct 0.006 measured

pct q20 bases 97.6 measured

pct q30 bases 93.8 measured

gc content pct 44.4 measured

mean read length 91 measured

mean base quality 35.9 measured

adapter content pct 0.02 measured

duplication rate pct 27.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%

mean base quality 35.9 measured ×0.6 100%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 27.92 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0