GSM4650123

GEO sample first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This human bulk-RNA-seq features 50bp short reads with excellent quality (99.1% Q20, 97.3% Q30) and minimal contamination, platform unspecified. The high-fidelity short-read data is well-suited for quantifying gene expression and identifying differentially expressed genes in human samples.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 99.1 measured

pct q30 bases 97.3 measured

gc content pct 49.3 measured

mean read length 50 measured

mean base quality 38.3 measured

adapter content pct 0.01 measured

duplication rate pct 31.9 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%

mean base quality 38.3 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 31.9 measured ×0.4 96%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0