GSM692082

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Tetrahymena thermophila bulk-RNA-seq comprises 75bp short reads with good quality (91.6% Q20, 87% Q30) and low GC content (37.3%), platform unspecified. The GC composition is atypical for eukaryotic transcriptomes and may reflect AT-rich ciliate gene content; suitable for studying gene expression in this unicellular model organism.

Data type / assay

bulk-RNA-seq

Organism

Tetrahymena thermophila

Metrics (value · how obtained)

n content pct 0.171 measured

pct q20 bases 91.6 measured

pct q30 bases 87 measured

gc content pct 37.3 measured

mean read length 75 measured

mean base quality 30.8 measured

adapter content pct 0.3 measured

duplication rate pct 52.44 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87 measured ×1 85%

mean base quality 30.8 measured ×0.6 47%

adapter content pct 0.3 measured ×0.4 100%

duplication rate pct 52.44 measured ×0.4 50%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0