GSM838671

GEO sample first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Mus musculus bulk RNA-seq achieves exceptional per-base accuracy (Q30=94.3%, Q20=98.1%) across 51 bp reads with balanced GC representation (48.6%)—despite missing platform metadata, the consistently high quality enables sensitive detection of subtle expression differences and supports genome-wide transcript profiling in this mammalian model.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.003 measured

pct q20 bases 98.1 measured

pct q30 bases 94.3 measured

gc content pct 48.6 measured

mean read length 51 measured

mean base quality 37.1 measured

adapter content pct 0.05 measured

duplication rate pct 11.46 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.3 measured ×1 100%

mean base quality 37.1 measured ×0.6 100%

adapter content pct 0.05 measured ×0.4 100%

duplication rate pct 11.46 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0