Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSM854430

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Danio rerio bulk RNA-seq achieved perfect base-quality metrics (Q30=100%, Q20=100%) on 72 bp reads—exceptional accuracy across all positions supports precise transcript-level abundance quantification and reliable splice-junction mapping in this vertebrate developmental model, enabling sensitive gene expression surveys and isoform discovery.

Data type / assay
bulk-RNA-seq
Organism
Danio rerio
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 43.2 measured
mean read length 72 measured
mean base quality 30 measured
adapter content pct 0 measured
duplication rate pct 75.87 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 75.87 measured ×0.4 0%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0