GSM872397

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Bacillus subtilis RNA-seq achieved perfect basecalling (Q20=100%, Q30=100%) on 50 bp reads—ideal for sensitive expression profiling in this model bacterium, with elevated GC content (52.3%) reflecting typical bacterial composition; read length supports unambiguous mapping to compact microbial genomes for detailed transcriptome characterization.

Data type / assay

bulk-RNA-seq

Organism

Bacillus subtilis subsp. subtilis str. 168

Metrics (value · how obtained)

n content pct 0.003 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 52.3 measured

mean read length 50 measured

mean base quality 30 measured

adapter content pct 0.02 measured

duplication rate pct 75.81 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 75.81 measured ×0.4 0%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0