GSM958728

GEO sample first seen 2015

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina Genome Analyzer

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

104 / 24 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 417219441141 reported

total reads 2912615444 reported

n content pct 1.144 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 50.6 measured

mean read length 76 measured

mean base quality 30 measured

adapter content pct 3.22 measured

duplication rate pct 26.54 measured

supplementary file types BAI, BAM, BIGBED, BIGWIG, GTF, TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 3.22 measured ×0.4 93%

duplication rate pct 26.54 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0