PRJDB4476

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Elaeis guineensis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

3 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 16100542108 reported

total reads 79705654 reported

n content pct 0.141 measured

pct q20 bases 91.1 measured

pct q30 bases 85.1 measured

gc content pct 50.5 measured

mean read length 101 measured

mean base quality 33.4 measured

adapter content pct 0.3 measured

duplication rate pct 27.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.1 measured ×1 76%

mean base quality 33.4 measured ×0.6 90%

adapter content pct 0.3 measured ×0.4 100%

duplication rate pct 27.92 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0