Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJDB5126

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This GridION hybrid short- and long-read whole-genome sequencing dataset from Citrobacter amalonaticus totals 621 million reads and 244 billion bases; however, the anomalous 0% Q20 and Q30 bases indicate non-standard quality reporting or data submission error requiring independent verification. The 49.2% GC fits Gram-negative bacterial composition; if quality can be validated, the read volume supports complete genome assembly. Researchers must retrieve raw sequence files and verify base-call quality independently before committing to assembly or variant analysis.

Data type / assay
WGS
Organism
Citrobacter amalonaticus
Instrument
GridION
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
243 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 244077597287 reported
total reads 621996159 reported
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 49.2 measured
mean read length 5538.5 measured
mean base quality 9.8 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0