Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJDB7523

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This mouse gut metagenome amplicon sequencing from Illumina MiSeq provides targeted microbial community profiling (576K reads, Q30=91.7%) with relatively small scale—well-suited for regional bacterial survey and abundance quantification, though limited sequencing depth may restrict detection of rare operational taxonomic units or alpha-diversity estimation in complex microbiota.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
24 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 327119471 reported
total reads 576345 reported
n content pct 0.931 measured
pct q20 bases 95.8 measured
pct q30 bases 91.7 measured
gc content pct 54 measured
mean read length 280.5 measured
mean base quality 35.8 measured
adapter content pct 0 measured
duplication rate pct 91.41 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.7 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0