Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJDB8678

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Mus musculus amplicon sequencing from Illumina MiSeq provides exceptionally deep targeted coverage (1.46 billion reads, 440 GB bases, Q30=89.7%)—supporting sensitive variant calling, rare-allele detection, and detailed genotype-phenotype association studies in this model organism; the massive scale enables high-depth sampling of specific genomic loci or complex gene regions.

Data type / assay
amplicon
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
85 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 440115083359 reported
total reads 1463419787 reported
n content pct 0 measured
pct q20 bases 96.2 measured
pct q30 bases 89.7 measured
gc content pct 53.1 measured
mean read length 284 measured
mean base quality 35.4 measured
adapter content pct 1.03 measured
duplication rate pct 91.66 measured
mean target coverage 8150.3 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.7 measured ×1 99%
adapter content pct 1.03 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0