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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
71/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Bacteroides fragilis
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
453468500
reported
total reads
906937
reported
n content pct
0.006
measured
pct q20 bases
88.9
measured
pct q30 bases
86.8
measured
gc content pct
43.7
measured
mean read length
250
measured
mean base quality
33.8
measured
adapter content pct
44.67
measured
duplication rate pct
7.09
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 71/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
86.8
measured
×1
84%
duplication rate pct
7.09
measured
×0.5
100%
adapter content pct
44.67
measured
×0.4
0%
QC cost
13 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0