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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
62/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1378465987669
reported
total reads
4603321201
reported
mean coverage
444.7
extrapolated
n content pct
0.002
measured
pct q20 bases
70.6
measured
pct q30 bases
59.4
measured
gc content pct
45.7
measured
mean read length
150
measured
mean base quality
28
measured
adapter content pct
0.34
measured
duplication rate pct
19.6
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 62/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
444.7
extrapolated
×1.2
100%
pct q30 bases
59.4
measured
×1
0%
duplication rate pct
19.6
measured
×0.5
64%
adapter content pct
0.34
measured
×0.4
100%
QC cost
10 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0