Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB10932

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

27/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Anaerobic digester metagenome whole-genome sequencing via Illumina HiSeq 2000 with 124.4 million reads and 37.3 billion bases at moderate quality (82.5% Q20, 70.1% Q30). The 55.5% GC and lower base accuracy reflect complex microbial communities in engineered systems. This dataset suits studying biogas-producing consortia and functional gene distribution but may require careful OTU clustering to manage sequencing error.

Data type / assay
WGS
Organism
anaerobic digester metagenome
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 37343506500 reported
total reads 124478355 reported
n content pct 0.003 measured
pct q20 bases 82.5 measured
pct q30 bases 70.1 measured
gc content pct 55.5 measured
mean read length 150 measured
mean base quality 28.9 measured
adapter content pct 28.12 measured
duplication rate pct 0.9 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 27/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 70.1 measured ×1 1%
duplication rate pct 0.9 measured ×0.5 100%
adapter content pct 28.12 measured ×0.4 0%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0