← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
70/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
38 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
123939325825
reported
total reads
1339415035
reported
mean coverage
40
extrapolated
n content pct
0.003
measured
pct q20 bases
90.6
measured
pct q30 bases
79.5
measured
gc content pct
52.7
measured
mean read length
100
measured
mean base quality
32
measured
adapter content pct
61.72
measured
duplication rate pct
0.16
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 70/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
40
extrapolated
×1.2
100%
pct q30 bases
79.5
measured
×1
48%
duplication rate pct
0.16
measured
×0.5
100%
adapter content pct
61.72
measured
×0.4
0%
QC cost
29 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0