Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB11535

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

45/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 whole-genome sequencing dataset from Mus spretus comprises 402 million reads and 79.6 billion bases for reference or comparative genomics studies. The 39% GC content is characteristic for mammalian genomes; however, the anomalous 0% Q30 bases and 75.2% Q20 metrics warrant independent quality verification before variant calling or assembly work. Researchers should retrieve raw quality distributions and confirm this organism against NCBI Taxonomy to ensure the dataset matches their intended target.

Data type / assay
WGS
Organism
Mus spretus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 79601127082 reported
total reads 402165951 reported
n content pct 1.336 measured
pct q20 bases 75.2 measured
pct q30 bases 0 measured
gc content pct 39 measured
mean read length 74.4 measured
mean base quality 19.7 measured
adapter content pct 0.01 measured
duplication rate pct 10.86 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 45/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 10.86 measured ×0.5 91%
adapter content pct 0.01 measured ×0.4 100%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0