Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB11728

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Candidatus Kryptonium thompsonii whole-genome amplified (WGA) using Illumina MiSeq yielding 14.8 million reads and 4.47 billion bases with exceptional quality (97.8% Q20, 97.3% Q30, zero N-content). The low GC at 37.6% reflects this uncultured candidate bacterium's nucleotide bias. WGA amplification bias is inherent to this method; users should account for potential coverage heterogeneity in downstream genome assembly and annotation.

Data type / assay
WGS
Organism
Candidatus Kryptonium thompsonii
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4477705378 reported
total reads 14826839 reported
n content pct 0 measured
pct q20 bases 97.8 measured
pct q30 bases 97.3 measured
gc content pct 37.6 measured
mean read length 151 measured
mean base quality 37.5 measured
adapter content pct 0.24 measured
duplication rate pct 33.51 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%
duplication rate pct 33.51 measured ×0.5 20%
adapter content pct 0.24 measured ×0.4 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0