Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB11845

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Homo sapiens amplicon dataset from 454 GS FLX Titanium generated 2.3 million reads (881 megabases) with good quality (93.1% Q20, 74.2% Q30) and 53% GC. The longer read lengths from pyrosequencing enable better phylogenetic marker resolution in amplicon-based studies, though the platform's higher per-base error rates require accounting for during analysis.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
184 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 881689822 reported
total reads 2340958 reported
n content pct 0.007 measured
pct q20 bases 93.1 measured
pct q30 bases 74.2 measured
gc content pct 53 measured
mean read length 389.1 measured
mean base quality 34.2 measured
adapter content pct 0 measured
duplication rate pct 93.41 measured
mean target coverage 14.2 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.2 measured ×1 21%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0